MolNFT v1 · #19807 · protein
Crystal structure of the beta-glycosidase from the hyperthermophile thermosphaera aggregans
1QVB: “Crystal structure of the beta-glycosidase from the hyperthermophile thermosphaera aggregans”. X-ray diffraction, 5 pockets (best druggability 0.76). MolNFT v1 #19807 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1QVB
- Type
- protein
- Length
- 962 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Beta-glycosidase
- UniProt
- Q9YGA8
- Pockets
- 5 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Beta-glycosidase | protein | 481 | 41% helix, 17% strand | Q9YGA8 |
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 814 | 0.76 | 0.80 | 71 | empty |
| 2 | 789 | 0.76 | 0.80 | 65 | empty |
| 3 | 60 | 0.72 | 0.98 | 20 | empty |
| 4 | 87 | 0.42 | 0.79 | 16 | empty |
| 5 | 85 | 0.41 | 0.79 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 909 Ų buried · 18 hydrogen bonds · protein-protein
Compared structures
- 1QVB · Crystal structure of the beta-glycosidase from the hyperthermophile thermosphaera… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9YGA8
- Elsewhere: RCSB PDB 1QVB · PDBe 1QVB · UniProt Q9YGA8
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