Research workbench

Sas6 with alpha-cyclodextrin

Analyse Sas6 with alpha-cyclodextrin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7UWW
Type: protein
Length: 1,259 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.61
Source: Ruminococcus bromii L2-63
Molecule: Starch Adherence System protein 6 (Sas6)
UniProt: A0A2N0UYM2
Ligands: GLC, CA, SCN
Pockets: 9 · best druggability 0.75

Structure

x-ray diffraction · resolution 1.61 · 2 distinct chains · 8% helix, 41% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Starch Adherence System protein 6 (Sas6)	protein	632	8% helix, 40% strand	A0A2N0UYM2
B	Starch Adherence System protein 6 (Sas6)	protein	627	8% helix, 41% strand	A0A2N0UYM2

Ligands and binding sites

GLC · alpha-D-glucopyranose · sugar · 12 copies · chains A, B
CA · Calcium ion · metal · 8 copies · chains A, B
SCN · Thiocyanate ion · ion · 19 copies · chains A, B
EDO · 1,2-ethanediol · additive · 14 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

9 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	423	0.75	0.85	55	SCN
2	342	0.69	0.82	50	EDO, SCN
3	409	0.61	0.76	52	SCN
4	365	0.53	0.73	42	SCN, EDO
5	105	0.53	0.83	18	empty

Interfaces

1 interface between chains.

A–B · 791 Å² buried · 6 hydrogen bonds · protein-protein

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A2N0UYM2
Elsewhere: RCSB PDB 7UWW · PDBe 7UWW · UniProt A0A2N0UYM2

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.