Research workbench
Cembrene A synthase from Eleutherobia rubra
Analyse Cembrene A synthase from Eleutherobia rubra in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7S5L
- Type
- protein
- Length
- 378 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.58
- Source
- Eleutherobia rubra
- Molecule
- Cembrene A synthase
- Ligands
- CL
- Pockets
- 4 · best druggability 0.79
Structure
x-ray diffraction · resolution 1.58 · 1 distinct chain · 73% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cembrene A synthase | protein | 378 | 73% helix, 3% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 664 | 0.79 | 0.84 | 51 | EDO |
| 2 | 143 | 0.49 | 0.78 | 18 | empty |
| 3 | 63 | 0.33 | 0.76 | 14 | empty |
| 4 | 61 | 0.32 | 0.75 | 12 | EDO |
Compared structures
- 7S5L · Cembrene a synthase from eleutherobia rubra · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7S5L · PDBe 7S5L
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