MolNFT v1 · #187217 · protein
Cembrene a synthase from eleutherobia rubra
7S5L: “Cembrene a synthase from eleutherobia rubra”. X-ray diffraction, 1 ligand (CL), 5 pockets (best druggability 0.79). MolNFT v1 #187217 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 7S5L
- Type
- protein
- Length
- 378 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cembrene a synthase
- Ligands
- CL
- Pockets
- 5 · best druggability 0.79
Structure
x-ray diffraction · 1 distinct chain · 73% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cembrene a synthase | protein | 378 | 73% helix, 3% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 664 | 0.79 | 0.84 | 51 | EDO |
| 2 | 143 | 0.49 | 0.78 | 18 | empty |
| 3 | 63 | 0.33 | 0.76 | 14 | empty |
| 4 | 73 | 0.32 | 0.74 | 19 | empty |
| 5 | 61 | 0.32 | 0.75 | 12 | EDO |
Compared structures
- 7S5L · Cembrene A synthase from Eleutherobia rubra · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7S5L · PDBe 7S5L
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