Research workbench
Odinarchaeota tubulin H393D mutant, in a psuedo protofilament arrangement, bound to 59% GDP, 41% phosphate
Analyse Odinarchaeota tubulin H393D mutant, in a psuedo protofilament arrangement… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7EVH
- Type
- protein
- Length
- 423 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.5
- Source
- Odinarchaeota archaeon (strain LCB_4)
- Molecule
- Tubulin-like protein
- UniProt
- A0A1Q9N9N5
- Ligands
- GDP, PO4
- Pockets
- 5 · best druggability 0.57
Structure
x-ray diffraction · resolution 2.5 · 1 distinct chain · 44% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tubulin-like protein | protein | 423 | 44% helix, 19% strand | A0A1Q9N9N5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 209 | 0.57 | 0.80 | 33 | GDP, PO4 |
| 2 | 107 | 0.39 | 0.76 | 31 | empty |
| 3 | 64 | 0.32 | 0.76 | 15 | empty |
| 4 | 72 | 0.32 | 0.75 | 14 | empty |
| 5 | 59 | 0.30 | 0.75 | 13 | empty |
Modifications
Observed in the structure: 2 covalent (covalent ligand).
Compared structures
- 7EVH · Odinarchaeota tubulin H393D mutant, in a psuedo protofilament arrangement, bound to 59%… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1Q9N9N5
- Elsewhere: RCSB PDB 7EVH · PDBe 7EVH · UniProt A0A1Q9N9N5
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