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Structure of Chloride ion pumping rhodopsin (ClR) with NTQ motif 50 ps after light activation

Analyse Structure of Chloride ion pumping rhodopsin (ClR) with NTQ motif 50 ps after… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7CRL
Type: protein
Length: 264 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.85
Source: Nonlabens marinus S1-08
Molecule: Chloride pumping rhodopsin
UniProt: W8VZW3
Ligands: OLA, RET, CL
Pockets: 1 · best druggability 0.72

Structure

x-ray diffraction · resolution 1.85 · 1 distinct chain · 81% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Chloride pumping rhodopsin	protein	264	81% helix, 3% strand	W8VZW3

Ligands and binding sites

OLA · Oleic acid · ligand · 7 copies · chains A
RET · Retinal · ligand · chains A
CL · Chloride ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	133	0.72	0.91	23	RET

Modifications

Observed in the structure: 1 cofactor (retinal Schiff base).

Compared structures

7CRL · Structure of chloride ion pumping rhodopsin (clr) with ntq motif 50 ps after light… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt W8VZW3
Elsewhere: RCSB PDB 7CRL · PDBe 7CRL · UniProt W8VZW3

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