Research workbench
Crystal structure of rsGCaMP in the ON state (non-illuminated)
Analyse Crystal structure of rsGCaMP in the ON state (non-illuminated) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6YA9
- Type
- protein
- Length
- 400 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.15
- Source
- Aequorea victoria
- Molecule
- rsCGaMP
- Ligands
- CA
- Pockets
- 3 · best druggability 0.80
Structure
x-ray diffraction · resolution 2.15 · 1 distinct chain · 33% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | rsCGaMP | protein | 400 | 33% helix, 31% strand | — |
Ligands and binding sites
- CA · Calcium ion · metal · 7 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 203 | 0.80 | 0.94 | 39 | empty |
| 2 | 552 | 0.69 | 0.79 | 76 | CA |
| 3 | 56 | 0.27 | 0.74 | 16 | empty |
Compared structures
- 6YA9 · Crystal structure of rsgcamp in the on state (non-illuminated) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6YA9 · PDBe 6YA9
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