Research workbench
crystal structure of apo Card1
Analyse crystal structure of apo Card1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6WXW
- Type
- protein
- Length
- 744 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.32
- Source
- Treponema succinifaciens (strain ATCC 33096 / DSM 2489 / 6091)
- Molecule
- Card1
- UniProt
- F2NWD3
- Pockets
- 6 · best druggability 0.60
Structure
x-ray diffraction · resolution 2.32 · 1 distinct chain · 44% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Card1 | protein | 372 | 44% helix, 21% strand | F2NWD3 |
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 486 | 0.60 | 0.74 | 55 | empty |
| 2 | 297 | 0.55 | 0.76 | 41 | empty |
| 3 | 237 | 0.50 | 0.75 | 38 | empty |
| 4 | 131 | 0.38 | 0.73 | 27 | empty |
| 5 | 50 | 0.31 | 0.77 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 1586 Ų buried · 29 hydrogen bonds · protein-protein
Compared structures
- 6WXW · Crystal structure of apo CARD1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F2NWD3
- Elsewhere: RCSB PDB 6WXW · PDBe 6WXW · UniProt F2NWD3
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