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Spin-labeled T4 Lysozyme (9/131FnbY)-(4-Amino-TEMPO)

Analyse Spin-labeled T4 Lysozyme (9/131FnbY)-(4-Amino-TEMPO) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6V51
Type: protein
Length: 164 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.5
Source: Enterobacteria phage T4
Molecule: Endolysin
EC: 3.2.1.17
UniProt: D9IEF7
Ligands: QPM
Pockets: 1 · best druggability 0.52

Structure

x-ray diffraction · resolution 1.5 · 1 distinct chain · 65% helix, 8% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Endolysin (EC 3.2.1.17)	protein	164	65% helix, 8% strand	D9IEF7

Ligands and binding sites

QPM · 4-amino-2,2,6,6-tetramethylpiperidin-1-ol · ligand · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	242	0.52	0.76	33	empty

Modifications

Observed in the structure: 1 covalent (covalent ligand).

Compared structures

6V51 · Spin-labeled T4 lysozyme (9/131FNBY)-(4-amino-tempo) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt D9IEF7
Elsewhere: RCSB PDB 6V51 · PDBe 6V51 · UniProt D9IEF7

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