Research workbench
Apo Human Calcium/Calmodulin-dependent kinase type 1D
Analyse Apo Human Calcium/Calmodulin-dependent kinase type 1D in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6QP5
- Type
- protein
- Length
- 266 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.9
- Source
- Homo sapiens
- Molecule
- Calcium/calmodulin-dependent protein kinase type 1D
- EC
- 2.7.11.17
- UniProt
- Q8IU85
- Ligands
- SO4
- Pockets
- 4 · best druggability 0.45
Structure
x-ray diffraction · resolution 1.9 · 1 distinct chain · 38% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Calcium/calmodulin-dependent protein kinase type 1D (EC 2.7.11.17) | protein | 266 | 38% helix, 17% strand | Q8IU85 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 99 | 0.45 | 0.79 | 18 | empty |
| 2 | 101 | 0.42 | 0.77 | 16 | empty |
| 3 | 74 | 0.39 | 0.78 | 13 | empty |
| 4 | 68 | 0.31 | 0.74 | 16 | empty |
Compared structures
- 6QP5 · Apo human CALCIUM/CALMODULIN-dependent kinase type 1D · the same entry in another collection · chain A against A, TM-score 1.00
- Q8IU85 · AlphaFold monomer V2.0 prediction for CALCIUM/CALMODULIN-dependent protein kinase type 1D… · a predicted model of the same protein · chain A against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8IU85
- Elsewhere: RCSB PDB 6QP5 · PDBe 6QP5 · UniProt Q8IU85
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