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Human carbonic anhydrase II with bound IrCp* complex (cofactor 9) to generate an artificial transfer hydrogenase (ATHase)

Analyse Human carbonic anhydrase II with bound IrCp* complex (cofactor 9) to generate… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6QFW
Type
protein
Length
256 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
1.2
Source
Homo sapiens
Molecule
Carbonic anhydrase 2
EC
4.2.1.1
UniProt
P00918
Ligands
JR8, ZN, IR, SO4
Pockets
1 · best druggability 0.56

Structure

x-ray diffraction · resolution 1.2 · 1 distinct chain · 15% helix, 30% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
ACarbonic anhydrase 2 (EC 4.2.1.1)protein25615% helix, 30% strandP00918

Ligands and binding sites

  • JR8 · 4-[3-(8-chloranyl-2',3',4',5',6'-pentamethyl-4-oxidanyl-7-oxidanylidene-spiro[1$l^{4},8$l^{4}-diaza-9$L^{7}-iridabicyclo[4.3.0]nona-1,3,5-triene-9,1'-1$L^{7}-iridapentacyclo[2.2.0.0^{1,3}.0^{1,5}.0^{2, 6}]hexane]-8-yl)propyl]benzenesulfonamide · ligand · chains A
  • ZN · Zinc ion · metal · chains A
  • IR · Iridium ion · metal · chains A
  • SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
11460.560.8225JR8

Compared structures

  • 6QFW · Human carbonic anhydrase II with bound ircp* complex (cofactor 9) to generate an… · the same entry in another collection · chain A against A, TM-score 1.00
  • P00918 · AlphaFold monomer V2.0 prediction for carbonic anhydrase 2 (P00918) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

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