Research workbench
Full-length S. pombe Mdn1 in the presence of AMPPNP (tail region)
Analyse Full-length S. pombe Mdn1 in the presence of AMPPNP (tail region) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6OR6
- Type
- protein
- Length
- 1,264 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 5.3
- Source
- Schizosaccharomyces pombe
- Molecule
- Midasin
- UniProt
- O94248
- Pockets
- 12 · best druggability 0.72
Structure
electron microscopy · resolution 5.3 · 1 distinct chain · 72% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Midasin | protein | 1264 | 72% helix, 0% strand | O94248 |
Pockets
12 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 414 | 0.72 | 0.83 | 76 | empty |
| 2 | 415 | 0.72 | 0.83 | 72 | empty |
| 3 | 400 | 0.72 | 0.83 | 69 | empty |
| 4 | 390 | 0.71 | 0.83 | 72 | empty |
| 5 | 631 | 0.67 | 0.77 | 63 | empty |
Compared structures
- 6OR6 · Full-length S. pombe MDN1 in the presence of amppnp (tail region) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O94248
- Elsewhere: RCSB PDB 6OR6 · PDBe 6OR6 · UniProt O94248
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.