MolNFT v1 · #159499 · protein

Full-length S. pombe MDN1 in the presence of amppnp (tail region)

6OR6 · Midasin: “Full-length S. pombe MDN1 in the presence of amppnp (tail region)”. Electron microscopy, 12 pockets (best druggability 0.72). MolNFT v1 #159499 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6OR6
Type: protein
Length: 1,264 residues
Chains: 1
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Midasin
UniProt: O94248
Pockets: 12 · best druggability 0.72

Structure

electron microscopy · 1 distinct chain · 72% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Midasin	protein	1264	72% helix, 0% strand	O94248

Pockets

12 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	414	0.72	0.83	76	empty
2	415	0.72	0.83	72	empty
3	400	0.72	0.83	69	empty
4	390	0.71	0.83	72	empty
5	631	0.67	0.77	63	empty

Compared structures

6OR6 · Full-length S. pombe Mdn1 in the presence of AMPPNP (tail region) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O94248
Elsewhere: RCSB PDB 6OR6 · PDBe 6OR6 · UniProt O94248

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