Research workbench

protein B

Analyse protein B in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6OOP
Type: protein
Length: 392 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.8
Source: Escherichia coli
Molecule: Multidrug transporter MdfA
UniProt: A0A1E5MBX7
Ligands: KHJ, PR
Pockets: 1 · best druggability 0.80

Structure

x-ray diffraction · resolution 2.8 · 1 distinct chain · 86% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Multidrug transporter MdfA	protein	392	86% helix, 0% strand	A0A1E5MBX7

Ligands and binding sites

KHJ · 1,1'-dimethyl-4,4'-bipyridin-1-ium · ligand · chains A
PR · Praseodymium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1195	0.80	0.82	74	KHJ

Compared structures

6OOP · PROTEIN B · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A1E5MBX7
Elsewhere: RCSB PDB 6OOP · PDBe 6OOP · UniProt A0A1E5MBX7

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