Research workbench

Xanthomonas citri Dephospho-PGM in complex with xylose-1-phosphate

Analyse Xanthomonas citri Dephospho-PGM in complex with xylose-1-phosphate in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6NQH
Type: protein
Length: 448 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.45
Source: Xanthomonas axonopodis pv. citri (strain 306)
Molecule: Phosphoglucomutase
UniProt: Q8PGN7
Ligands: X1P, MG
Pockets: 2 · best druggability 0.75

Structure

x-ray diffraction · resolution 1.45 · 1 distinct chain · 40% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Phosphoglucomutase	protein	448	40% helix, 21% strand	Q8PGN7

Ligands and binding sites

X1P · 1-O-phosphono-alpha-D-xylopyranose · sugar · 2 copies · chains A
MG · Magnesium ion · metal · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	468	0.75	0.84	54	X1P
2	53	0.30	0.76	14	empty

Compared structures

6NQH · Xanthomonas citri dephospho-pgm in complex with xylose-1-phosphate · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8PGN7
Elsewhere: RCSB PDB 6NQH · PDBe 6NQH · UniProt Q8PGN7

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