MolNFT v1 · #158325 · protein
Xanthomonas citri dephospho-pgm in complex with xylose-1-phosphate
6NQH · Phosphoglucomutase: “Xanthomonas citri dephospho-pgm in complex with xylose-1-phosphate”. X-ray diffraction, 2 ligands (X1P, MG), 2 pockets (best druggability 0.75). MolNFT v1 #158325 on GenesisL1: 3D structure, binding sites and…
- PDB
- 6NQH
- Type
- protein
- Length
- 448 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phosphoglucomutase
- UniProt
- Q8PGN7
- Ligands
- X1P, MG
- Pockets
- 2 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphoglucomutase | protein | 448 | 40% helix, 21% strand | Q8PGN7 |
Ligands and binding sites
- X1P · 1-O-phosphono-alpha-D-xylopyranose · ligand · 2 copies · chains A
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 468 | 0.75 | 0.84 | 54 | X1P |
| 2 | 53 | 0.30 | 0.76 | 14 | empty |
Compared structures
- 6NQH · Xanthomonas citri Dephospho-PGM in complex with xylose-1-phosphate · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8PGN7
- Elsewhere: RCSB PDB 6NQH · PDBe 6NQH · UniProt Q8PGN7
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