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Crystal structure of fragmin F2-F3 domains (calcium condition)

Analyse Crystal structure of fragmin F2-F3 domains (calcium condition) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6LJD
Type: protein
Length: 208 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.15
Source: Physarum polycephalum
Molecule: Actin-binding protein fragmin P
UniProt: Q94707
Ligands: CA, SO4, CL
Pockets: 1 · best druggability 0.72

Structure

x-ray diffraction · resolution 2.15 · 1 distinct chain · 33% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
C	Actin-binding protein fragmin P	protein	208	33% helix, 28% strand	Q94707

Ligands and binding sites

CA · Calcium ion · metal · 3 copies · chains C
SO4 · Sulfate ion · ion · chains C
CL · Chloride ion · ion · chains C
GOL · Glycerol · additive · chains C
MES · 2-(N-morpholino)-ethanesulfonic acid · additive · chains C

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	279	0.72	0.85	39	GOL

Compared structures

6LJD · Crystal structure of fragmin F2-F3 domains (calcium condition) · the same entry in another collection · chain C against C, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q94707
Elsewhere: RCSB PDB 6LJD · PDBe 6LJD · UniProt Q94707

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