Research workbench
Crystal structure of Enterovirus D68 RdRp
Analyse Crystal structure of Enterovirus D68 RdRp in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6L4R
- Type
- protein
- Length
- 455 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.147
- Source
- Enterovirus D68
- Molecule
- RdRp
- EC
- 2.7.7.48
- UniProt
- I6TFG7
- Pockets
- 4 · best druggability 0.62
Structure
x-ray diffraction · resolution 2.147 · 1 distinct chain · 42% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RdRp (EC 2.7.7.48) | protein | 455 | 42% helix, 16% strand | I6TFG7 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 548 | 0.62 | 0.75 | 57 | empty |
| 2 | 406 | 0.61 | 0.76 | 49 | empty |
| 3 | 114 | 0.42 | 0.76 | 18 | empty |
| 4 | 81 | 0.31 | 0.73 | 18 | empty |
Compared structures
- 6L4R · Crystal structure of enterovirus D68 rdrp · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt I6TFG7
- Elsewhere: RCSB PDB 6L4R · PDBe 6L4R · UniProt I6TFG7
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