Research workbench
Crytsal structure of ScpB derived from Pyrococcus yayanosii
Analyse Crytsal structure of ScpB derived from Pyrococcus yayanosii in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6JUV
- Type
- protein
- Length
- 379 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.043
- Source
- Pyrococcus yayanosii CH1
- Molecule
- Segregation and condensation protein B
- UniProt
- F8AFC4
- Ligands
- CL
- Pockets
- 1 · best druggability 0.58
Structure
x-ray diffraction · resolution 3.043 · 2 distinct chains · 61% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Segregation and condensation protein B | protein | 192 | 62% helix, 15% strand | F8AFC4 |
| B | Segregation and condensation protein B | protein | 187 | 59% helix, 15% strand | F8AFC4 |
Ligands and binding sites
- CL · Chloride ion · ion · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 310 | 0.58 | 0.77 | 41 | empty |
Interfaces
1 interface between chains.
- A–B · 653 Ų buried · 5 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 6JUV · Crytsal structure of scpb derived from pyrococcus yayanosii · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F8AFC4
- Elsewhere: RCSB PDB 6JUV · PDBe 6JUV · UniProt F8AFC4
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