MolNFT v1 · #153925 · protein
Crytsal structure of scpb derived from pyrococcus yayanosii
6JUV · Segregation and condensation protein B: “Crytsal structure of scpb derived from pyrococcus yayanosii”. X-ray diffraction, 1 ligand (CL), 1 pocket (best druggability 0.58). MolNFT v1 #153925 on GenesisL1: 3D structure, binding sites…
- PDB
- 6JUV
- Type
- protein
- Length
- 379 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Segregation and condensation protein B
- UniProt
- F8AFC4
- Ligands
- CL
- Pockets
- 1 · best druggability 0.58
Structure
x-ray diffraction · 2 distinct chains · 61% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Segregation and condensation protein B | protein | 192 | 62% helix, 15% strand | F8AFC4 |
| B | Segregation and condensation protein B | protein | 187 | 59% helix, 15% strand | F8AFC4 |
Ligands and binding sites
- CL · Chloride ion · ion · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 310 | 0.58 | 0.77 | 41 | empty |
Interfaces
1 interface between chains.
- A–B · 653 Ų buried · 5 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 6JUV · Crytsal structure of ScpB derived from Pyrococcus yayanosii · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F8AFC4
- Elsewhere: RCSB PDB 6JUV · PDBe 6JUV · UniProt F8AFC4
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.