Research workbench
Crystal structure of CYP97A3
Analyse Crystal structure of CYP97A3 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6J94
- Type
- protein
- Length
- 914 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.401
- Source
- Arabidopsis thaliana
- Molecule
- Protein LUTEIN DEFICIENT 5, chloroplastic
- EC
- 1.14.-.-
- UniProt
- Q93VK5
- Ligands
- HEM
- Pockets
- 11 · best druggability 0.84
Structure
x-ray diffraction · resolution 2.401 · 2 distinct chains · 53% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein LUTEIN DEFICIENT 5, chloroplastic (EC 1.14.-.-) | protein | 457 | 53% helix, 12% strand | Q93VK5 |
| B | Protein LUTEIN DEFICIENT 5, chloroplastic (EC 1.14.-.-) | protein | 457 | 54% helix, 12% strand | Q93VK5 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
11 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1104 | 0.84 | 0.84 | 88 | HEM |
| 2 | 1103 | 0.83 | 0.84 | 91 | HEM |
| 3 | 384 | 0.61 | 0.77 | 53 | empty |
| 4 | 227 | 0.54 | 0.77 | 28 | empty |
| 5 | 170 | 0.53 | 0.79 | 26 | empty |
Interfaces
1 interface between chains.
- A–B · 1479 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q93VK5
- Elsewhere: RCSB PDB 6J94 · PDBe 6J94 · UniProt Q93VK5
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