MolNFT v1 · #153275 · protein
Crystal structure of CYP97A3
6J94 · Protein lutein deficient 5, chloroplastic: “Crystal structure of CYP97A3”. X-ray diffraction, 1 ligand (HEM), 11 pockets (best druggability 0.84). MolNFT v1 #153275 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6J94
- Type
- protein
- Length
- 914 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein lutein deficient 5, chloroplastic
- EC
- 1.14.-.-
- UniProt
- Q93VK5
- Ligands
- HEM
- Pockets
- 11 · best druggability 0.84
Structure
x-ray diffraction · 2 distinct chains · 53% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein lutein deficient 5, chloroplastic (EC 1.14.-.-) | protein | 457 | 53% helix, 12% strand | Q93VK5 |
| B | Protein lutein deficient 5, chloroplastic (EC 1.14.-.-) | protein | 457 | 54% helix, 12% strand | Q93VK5 |
Ligands and binding sites
- HEM · Protoporphyrin IX containing Fe · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
11 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1104 | 0.84 | 0.84 | 88 | HEM |
| 2 | 1103 | 0.83 | 0.84 | 91 | HEM |
| 3 | 384 | 0.61 | 0.77 | 53 | empty |
| 4 | 227 | 0.54 | 0.77 | 28 | empty |
| 5 | 170 | 0.53 | 0.79 | 26 | empty |
Interfaces
1 interface between chains.
- A–B · 1479 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q93VK5
- Elsewhere: RCSB PDB 6J94 · PDBe 6J94 · UniProt Q93VK5
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