Research workbench
E. coli methionine aminopeptidase crystal structure fitted into the cryo-EM density map of E. coli 70S ribosome in complex with methionine aminopeptidase
Analyse E. coli methionine aminopeptidase crystal structure fitted into the cryo-EM… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6IZ7
- Type
- protein
- Length
- 262 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 11.8
- Source
- Escherichia coli K-12
- Molecule
- Methionine aminopeptidase
- EC
- 3.4.11.18
- UniProt
- P0AE18
- Pockets
- 4 · best druggability 0.47
Structure
electron microscopy · resolution 11.8 · 1 distinct chain · 0% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| P | Methionine aminopeptidase (EC 3.4.11.18) | protein | 262 | 0% helix, 0% strand | P0AE18 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 202 | 0.47 | 0.73 | 54 | empty |
| 2 | 92 | 0.36 | 0.73 | 35 | empty |
| 3 | 82 | 0.34 | 0.73 | 28 | empty |
| 4 | 52 | 0.27 | 0.72 | 21 | empty |
Compared structures
- 6IZ7 · E. COLI methionine aminopeptidase crystal structure fitted into the cryo-EM density MAP… · the same entry in another collection · chain P against P, TM-score 1.00
- P0AE18 · AlphaFold monomer V2.0 prediction for methionine aminopeptidase (P0AE18) · a predicted model of the same protein · chain P against A, TM-score 0.95
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AE18
- Elsewhere: RCSB PDB 6IZ7 · PDBe 6IZ7 · UniProt P0AE18
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