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X-ray structure of sortase C from Clostridium perfringens SM101

Analyse X-ray structure of sortase C from Clostridium perfringens SM101 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6IXZ
Type: protein
Length: 367 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.98
Source: Clostridium perfringens (strain SM101 / Type A)
Molecule: Sortase family protein
UniProt: Q0SWL7
Pockets: 4 · best druggability 0.67

Structure

x-ray diffraction · resolution 1.98 · 2 distinct chains · 29% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sortase family protein	protein	190	30% helix, 32% strand	Q0SWL7
B	Sortase family protein	protein	177	28% helix, 34% strand	Q0SWL7

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	309	0.67	0.82	37	empty
2	284	0.62	0.80	40	empty
3	124	0.43	0.76	16	empty
4	109	0.40	0.76	16	empty

Interfaces

1 interface between chains.

A–B · 475 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

6IXZ · X-ray structure of sortase C from clostridium perfringens SM101 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q0SWL7
Elsewhere: RCSB PDB 6IXZ · PDBe 6IXZ · UniProt Q0SWL7

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