MolNFT v1 · #152926 · protein
X-ray structure of sortase C from clostridium perfringens SM101
6IXZ · Sortase family protein: “X-ray structure of sortase C from clostridium perfringens SM101”. X-ray diffraction, 4 pockets (best druggability 0.67). MolNFT v1 #152926 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 6IXZ
- Type
- protein
- Length
- 367 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sortase family protein
- UniProt
- Q0SWL7
- Pockets
- 4 · best druggability 0.67
Structure
x-ray diffraction · 2 distinct chains · 29% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sortase family protein | protein | 190 | 30% helix, 32% strand | Q0SWL7 |
| B | Sortase family protein | protein | 177 | 28% helix, 34% strand | Q0SWL7 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 309 | 0.67 | 0.82 | 37 | empty |
| 2 | 284 | 0.62 | 0.80 | 40 | empty |
| 3 | 124 | 0.43 | 0.76 | 16 | empty |
| 4 | 109 | 0.40 | 0.76 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 475 Ų buried · 5 hydrogen bonds · protein-protein
Compared structures
- 6IXZ · X-ray structure of sortase C from Clostridium perfringens SM101 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0SWL7
- Elsewhere: RCSB PDB 6IXZ · PDBe 6IXZ · UniProt Q0SWL7
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