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Structural insight into probable lipid transfer mechanism of non-specific lipid transfer protein via intermediate structures in Solanum melongena

Analyse Structural insight into probable lipid transfer mechanism of non-specific lipid… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6IWP
Type: protein
Length: 90 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.4
Source: Solanum melongena
Molecule: Non-specific lipid-transfer protein
UniProt: A0A247D6Y2
Ligands: MYR
Pockets: 1 · best druggability 0.81

Structure

x-ray diffraction · resolution 2.4 · 1 distinct chain · 67% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Non-specific lipid-transfer protein	protein	90	67% helix, 0% strand	A0A247D6Y2

Ligands and binding sites

MYR · Myristic acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	316	0.81	0.91	36	MYR

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

6IWP · Structural insight into probable lipid transfer mechanism of non- specific lipid transfer… · the same entry in another collection · chain A against A, TM-score 1.00

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Every structure of UniProt A0A247D6Y2
Elsewhere: RCSB PDB 6IWP · PDBe 6IWP · UniProt A0A247D6Y2

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