Research workbench
Crystal structure of ADCP1 tandem Agenet domain 3-4
Analyse Crystal structure of ADCP1 tandem Agenet domain 3-4 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6IE5
- Type
- protein
- Length
- 141 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.298
- Source
- Arabidopsis thaliana
- Molecule
- Agenet domain-containing protein
- UniProt
- Q500V5
- Pockets
- 2 · best druggability 0.54
Structure
x-ray diffraction · resolution 2.298 · 1 distinct chain · 12% helix, 52% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Agenet domain-containing protein | protein | 141 | 12% helix, 52% strand | Q500V5 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 157 | 0.54 | 0.80 | 26 | empty |
| 2 | 126 | 0.43 | 0.76 | 24 | empty |
Compared structures
- 6IE5 · Crystal structure of ADCP1 tandem agenet domain 3-4 · the same entry in another collection · chain A against A, TM-score 1.00
- Q500V5 · AlphaFold monomer V2.0 prediction for protein agenet domain (agd)-containing P1 (Q500V5) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q500V5
- Elsewhere: RCSB PDB 6IE5 · PDBe 6IE5 · UniProt Q500V5
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