Research workbench
apo-form of polyphenol oxidase from Solanum lycopersicum
Analyse apo-form of polyphenol oxidase from Solanum lycopersicum in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6HQJ
- Type
- protein
- Length
- 471 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.802
- Source
- Solanum lycopersicum
- Molecule
- Polyphenol oxidase A, chloroplastic
- EC
- 1.10.3.1
- Pockets
- 5 · best druggability 0.67
Structure
x-ray diffraction · resolution 1.802 · 1 distinct chain · 33% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polyphenol oxidase A, chloroplastic (EC 1.10.3.1) | protein | 471 | 33% helix, 19% strand | — |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 299 | 0.67 | 0.82 | 51 | empty |
| 2 | 70 | 0.42 | 0.81 | 18 | empty |
| 3 | 136 | 0.41 | 0.75 | 22 | empty |
| 4 | 60 | 0.34 | 0.77 | 13 | empty |
| 5 | 70 | 0.33 | 0.76 | 21 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 6HQJ · Apo-form of polyphenol oxidase from solanum lycopersicum · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6HQJ · PDBe 6HQJ
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