MolNFT v1 · #151529 · protein

Apo-form of polyphenol oxidase from solanum lycopersicum

6HQJ · Polyphenol oxidase a, chloroplastic: “Apo-form of polyphenol oxidase from solanum lycopersicum”. X-ray diffraction, 5 pockets (best druggability 0.67). MolNFT v1 #151529 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 6HQJ
Type: protein
Length: 471 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Polyphenol oxidase a, chloroplastic
EC: 1.10.3.1
Pockets: 5 · best druggability 0.67

Structure

x-ray diffraction · 1 distinct chain · 33% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Polyphenol oxidase a, chloroplastic (EC 1.10.3.1)	protein	471	33% helix, 19% strand	—

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	299	0.67	0.82	51	empty
2	70	0.42	0.81	18	empty
3	136	0.41	0.75	22	empty
4	60	0.34	0.77	13	empty
5	70	0.33	0.76	21	empty

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

6HQJ · apo-form of polyphenol oxidase from Solanum lycopersicum · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6HQJ · PDBe 6HQJ

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