Research workbench
holo-form of polyphenol oxidase from Solanum lycopersicum
Analyse holo-form of polyphenol oxidase from Solanum lycopersicum in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6HQI
- Type
- protein
- Length
- 444 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.85
- Source
- Solanum lycopersicum
- Molecule
- Polyphenol oxidase A, chloroplastic
- EC
- 1.10.3.1
- Ligands
- CU, O
- Pockets
- 3 · best druggability 0.66
Structure
x-ray diffraction · resolution 1.85 · 1 distinct chain · 33% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Polyphenol oxidase A, chloroplastic (EC 1.10.3.1) | protein | 444 | 33% helix, 20% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 286 | 0.66 | 0.82 | 49 | empty |
| 2 | 85 | 0.58 | 0.87 | 19 | empty |
| 3 | 92 | 0.34 | 0.74 | 19 | empty |
Compared structures
- 6HQI · Holo-form of polyphenol oxidase from solanum lycopersicum · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6HQI · PDBe 6HQI
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