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Structure of Agrobacterium tumefaciens B6 strain PBP SocA complexed with Deoxyfructosylglutamine (DFG) at 1.8 A resolution

Analyse Structure of Agrobacterium tumefaciens B6 strain PBP SocA complexed with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6HQH
Type: protein
Length: 242 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.8
Source: Rhizobium radiobacter
Molecule: Membrane-bound lytic murein transglycosylase F
UniProt: A0A0F4FYR3
Ligands: SNW
Pockets: 2 · best druggability 0.80

Structure

x-ray diffraction · resolution 1.8 · 1 distinct chain · 37% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Membrane-bound lytic murein transglycosylase F	protein	242	37% helix, 24% strand	A0A0F4FYR3

Ligands and binding sites

SNW · Deoxyfructosylglutamine · ligand · chains A
EDO · 1,2-ethanediol · additive · 6 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	183	0.80	0.94	41	SNW
2	89	0.32	0.73	19	EDO

Compared structures

6HQH · Structure of agrobacterium tumefaciens B6 strain pbp soca complexed with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0F4FYR3
Elsewhere: RCSB PDB 6HQH · PDBe 6HQH · UniProt A0A0F4FYR3

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