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Ligand · SNW

SNW · Deoxyfructosylglutamine

SNW, Deoxyfructosylglutamine (C11 H20 N2 O8, 308.3 g/mol), in the MolNFT structures on GenesisL1: bound in 6 records (3 PDB entries). Every binding site with its residues within 4.5 Å, the residues it binds most and the ligands found with…

Component
SNW
Formula
C11 H20 N2 O8
Class
ligand
Structures
6
PDB entries
3

Binding sites

SNW in 6 structures; the first of them:

  • 5L9I · Crystal structure of the periplasmic binding protein MotA in complex with DFG from A.… · SNW A401 · binds SER36, SER37, TRP41, PHE66, GLN67, GLN87, ILE88, GLY89 and 11 more
  • 5LOM · Crystal structure of the PBP SocA from Agrobacterium tumefaciens C58 in complex with DFG… · SNW A301 · binds MET52, ALA55, TYR58, PHE96, ALA113, ALA114, ILE115, GLY116 and 16 more
  • 6HQH · Structure of Agrobacterium tumefaciens B6 strain PBP SocA complexed with… · SNW A301 · binds MET52, ALA55, PHE96, ALA113, ALA114, ILE115, GLY116, ARG121 and 14 more
  • 5L9I · Crystal structure of the periplasmic binding protein mota in complex with dfg from a.… · SNW A401 · binds SER36, SER37, TRP41, PHE66, GLN67, GLN87, ILE88, GLY89 and 11 more
  • 5LOM · Crystal structure of the pbp soca from agrobacterium tumefaciens C58 in complex with dfg… · SNW A301 · binds MET52, ALA55, TYR58, PHE96, ALA113, ALA114, ILE115, GLY116 and 16 more
  • 6HQH · Structure of agrobacterium tumefaciens B6 strain pbp soca complexed with… · SNW A301 · binds MET52, ALA55, PHE96, ALA113, ALA114, ILE115, GLY116, ARG121 and 14 more

Residues it binds most

ALA 6, PHE 10, GLN 10, GLY 10, LEU 6, SER 10, ASP 10, TRP 4, ARG 10, ILE 10 (residue and the binding sites it lines).

Found with

  • EDO · 1,2-ethanediol
  • CA · Calcium ion
  • PEG · Di(hydroxyethyl)ether

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