Research workbench
Crystal structure of the binding domain of Paraclostridial Mosquitocidal Protein 1
Analyse Crystal structure of the binding domain of Paraclostridial Mosquitocidal… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6HOX
- Type
- protein
- Length
- 421 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.95
- Source
- Paraclostridium bifermentans
- Molecule
- Binding domain (Hc) of Paraclostridial Mosquitocidal Protein 1
- Pockets
- 4 · best druggability 0.52
Structure
x-ray diffraction · resolution 1.95 · 1 distinct chain · 10% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Binding domain (Hc) of Paraclostridial Mosquitocidal Protein 1 | protein | 421 | 10% helix, 43% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 119 | 0.52 | 0.81 | 20 | empty |
| 2 | 66 | 0.52 | 0.86 | 20 | empty |
| 3 | 107 | 0.35 | 0.74 | 27 | empty |
| 4 | 56 | 0.26 | 0.72 | 17 | empty |
Compared structures
- 6HOX · Crystal structure of the binding domain of paraclostridial mosquitocidal protein 1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6HOX · PDBe 6HOX
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