MolNFT v1 · #151476 · protein
Crystal structure of the binding domain of paraclostridial mosquitocidal protein 1
6HOX · Binding domain (hc) of paraclostridial mosquitocidal…: “Crystal structure of the binding domain of paraclostridial mosquitocidal protein 1”. X-ray diffraction, 4 pockets (best druggability 0.52). MolNFT v1 #151476 on GenesisL1: 3D…
- PDB
- 6HOX
- Type
- protein
- Length
- 421 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Binding domain (hc) of paraclostridial mosquitocidal protein 1
- Pockets
- 4 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 10% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Binding domain (hc) of paraclostridial mosquitocidal protein 1 | protein | 421 | 10% helix, 43% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 119 | 0.52 | 0.81 | 20 | empty |
| 2 | 66 | 0.52 | 0.86 | 20 | empty |
| 3 | 107 | 0.35 | 0.74 | 27 | empty |
| 4 | 56 | 0.26 | 0.72 | 17 | empty |
Compared structures
- 6HOX · Crystal structure of the binding domain of Paraclostridial Mosquitocidal Protein 1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6HOX · PDBe 6HOX
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