Research workbench
Crystal structure of RsgA from Pseudomonas aeruginosa
Analyse Crystal structure of RsgA from Pseudomonas aeruginosa in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6H4D
- Type
- protein
- Length
- 274 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.9
- Source
- Pseudomonas aeruginosa PAO1
- Molecule
- Small ribosomal subunit biogenesis GTPase RsgA
- EC
- 3.6.1.-
- UniProt
- Q9HUL3
- Ligands
- GDP, ZN
- Pockets
- 1 · best druggability 0.39
Structure
x-ray diffraction · resolution 2.9 · 1 distinct chain · 30% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Small ribosomal subunit biogenesis GTPase RsgA (EC 3.6.1.-) | protein | 274 | 30% helix, 27% strand | Q9HUL3 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 65 | 0.39 | 0.79 | 17 | empty |
Compared structures
- 6H4D · Crystal structure of rsga from pseudomonas aeruginosa · the same entry in another collection · chain A against A, TM-score 1.00
- Q9HUL3 · AlphaFold monomer V2.0 prediction for small ribosomal subunit biogenesis GTPase rsga… · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9HUL3
- Elsewhere: RCSB PDB 6H4D · PDBe 6H4D · UniProt Q9HUL3
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