Research workbench
Metal soaked Flv1 flavodiiron core from Synechocystis sp. PCC6803
Analyse Metal soaked Flv1 flavodiiron core from Synechocystis sp. PCC6803 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6H0D
- Type
- protein
- Length
- 403 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.598
- Source
- Synechocystis sp. (strain PCC 6803 / Kazusa)
- Molecule
- Putative diflavin flavoprotein A 3
- EC
- 1.-.-.-
- UniProt
- P74373
- Ligands
- SO4, CL
- Pockets
- 4 · best druggability 0.72
Structure
x-ray diffraction · resolution 1.598 · 1 distinct chain · 38% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative diflavin flavoprotein A 3 (EC 1.-.-.-) | protein | 403 | 38% helix, 24% strand | P74373 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 68 | 0.72 | 0.96 | 24 | empty |
| 2 | 407 | 0.65 | 0.79 | 39 | empty |
| 3 | 88 | 0.40 | 0.78 | 20 | empty |
| 4 | 59 | 0.34 | 0.77 | 15 | SO4 |
Compared structures
- 6H0D · Metal soaked FLV1 flavodiiron core from synechocystis sp. PCC6803 · the same entry in another collection · chain A against A, TM-score 1.00
- P74373 · AlphaFold monomer V2.0 prediction for putative diflavin flavoprotein a 3 (P74373) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P74373
- Elsewhere: RCSB PDB 6H0D · PDBe 6H0D · UniProt P74373
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.