MolNFT v1 · #150655 · protein
Metal soaked FLV1 flavodiiron core from synechocystis sp. PCC6803
6H0D · Putative diflavin flavoprotein a 3: “Metal soaked FLV1 flavodiiron core from synechocystis sp. PCC6803”. X-ray diffraction, 2 ligands (SO4, CL), 4 pockets (best druggability 0.72). MolNFT v1 #150655 on GenesisL1: 3D structure…
- PDB
- 6H0D
- Type
- protein
- Length
- 403 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative diflavin flavoprotein a 3
- EC
- 1.-.-.-
- UniProt
- P74373
- Ligands
- SO4, CL
- Pockets
- 4 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative diflavin flavoprotein a 3 (EC 1.-.-.-) | protein | 403 | 38% helix, 24% strand | P74373 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 68 | 0.72 | 0.96 | 24 | empty |
| 2 | 407 | 0.65 | 0.79 | 39 | empty |
| 3 | 88 | 0.40 | 0.78 | 20 | empty |
| 4 | 59 | 0.34 | 0.77 | 15 | SO4 |
Compared structures
- 6H0D · Metal soaked Flv1 flavodiiron core from Synechocystis sp. PCC6803 · the same entry in another collection · chain A against A, TM-score 1.00
- P74373 · AlphaFold monomer V2.0 prediction for putative diflavin flavoprotein a 3 (P74373) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P74373
- Elsewhere: RCSB PDB 6H0D · PDBe 6H0D · UniProt P74373
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