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Solution NMR structure of the tetramethylrhodamine (TMR) aptamer 3 in complex with 5-TAMRA

Analyse Solution NMR structure of the tetramethylrhodamine (TMR) aptamer 3 in complex… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6GZK
Type: RNA
Length: 48 nucleotides
Chains: 1
Method: solution nmr
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: NOT
Source: synthetic construct
Molecule: TMR3 (48-mer)
Ligands: FH8
Pockets: 1 · best druggability 0.54

Structure

solution nmr · resolution NOT · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	TMR3 (48-mer)	rna	48	—	—

Ligands and binding sites

FH8 · 5-carboxy methylrhodamine · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	352	0.54	0.75	30	FH8

Compared structures

6GZK · Solution NMR structure of the tetramethylrhodamine (tmr) aptamer 3 in complex with 5-tamra · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6GZK · PDBe 6GZK

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