MolNFT v1 · #150630 · RNA

Solution NMR structure of the tetramethylrhodamine (tmr) aptamer 3 in complex with 5-tamra

6GZK · TMR3 (48-mer): “Solution NMR structure of the tetramethylrhodamine (tmr) aptamer 3 in complex with 5-tamra”. Solution nmr, 1 ligand (FH8), 1 pocket (best druggability 0.54). MolNFT v1 #150630 on GenesisL1: 3D structure, binding…

PDB: 6GZK
Type: RNA
Length: 48 nucleotides
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: TMR3 (48-mer)
Ligands: FH8
Pockets: 1 · best druggability 0.54

Structure

solution nmr · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	TMR3 (48-mer)	rna	48	—	—

Ligands and binding sites

FH8 · 5-carboxy methylrhodamine · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	352	0.54	0.75	30	FH8

Compared structures

6GZK · Solution NMR structure of the tetramethylrhodamine (TMR) aptamer 3 in complex with 5-TAMRA · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6GZK · PDBe 6GZK

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