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Crystal structure of DacA from Staphylococcus aureus
Analyse Crystal structure of DacA from Staphylococcus aureus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6GYW
- Type
- protein
- Length
- 301 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.7
- Source
- Staphylococcus aureus
- Molecule
- Diadenylate cyclase
- EC
- 2.7.7.85
- UniProt
- A0A2P7CAT2
- Pockets
- 1 · best druggability 0.30
Structure
x-ray diffraction · resolution 1.7 · 2 distinct chains · 37% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Diadenylate cyclase (EC 2.7.7.85) | protein | 150 | 37% helix, 24% strand | A0A2P7CAT2 |
| B | Diadenylate cyclase (EC 2.7.7.85) | protein | 151 | 36% helix, 24% strand | A0A2P7CAT2 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 59 | 0.30 | 0.75 | 13 | empty |
Interfaces
1 interface between chains.
- A–B · 755 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
- 6GYW · Crystal structure of daca from staphylococcus aureus · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2P7CAT2
- Elsewhere: RCSB PDB 6GYW · PDBe 6GYW · UniProt A0A2P7CAT2
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