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The Crystal Structure of XOAT1
Analyse The Crystal Structure of XOAT1 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6CCI
- Type
- protein
- Length
- 354 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.85
- Source
- Arabidopsis thaliana
- Molecule
- Protein ESKIMO 1
- UniProt
- Q9LY46
- Ligands
- NAG, CO, CA
- Pockets
- 3 · best druggability 0.56
Structure
x-ray diffraction · resolution 1.85 · 1 distinct chain · 30% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein ESKIMO 1 | protein | 354 | 30% helix, 21% strand | Q9LY46 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 7 copies · chains A
- CO · Cobalt (II) ion · metal · 2 copies · chains A
- CA · Calcium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 333 | 0.56 | 0.75 | 49 | empty |
| 2 | 97 | 0.38 | 0.76 | 18 | empty |
| 3 | 50 | 0.31 | 0.77 | 18 | empty |
Modifications
Observed in the structure: 6 glycan, 4 disulfide (N-glycosylation, disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9LY46
- Elsewhere: RCSB PDB 6CCI · PDBe 6CCI · UniProt Q9LY46
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