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Crystal Structure of the Capsid Protein from Zika Virus

Analyse Crystal Structure of the Capsid Protein from Zika Virus in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5YGH
Type: protein
Length: 146 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.884
Source: Zika virus (strain Mr 766)
Molecule: Capsid protein
UniProt: A0A1S6Q290
Pockets: 1 · best druggability 0.39

Structure

x-ray diffraction · resolution 1.884 · 1 distinct chain · 67% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Capsid protein	protein	73	67% helix, 0% strand	A0A1S6Q290

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	59	0.39	0.80	20	empty

Interfaces

1 interface between chains.

A–B · 2413 Å² buried · 20 hydrogen bonds · protein-protein

Compared structures

5YGH · Crystal structure of the capsid protein from zika virus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A1S6Q290
Elsewhere: RCSB PDB 5YGH · PDBe 5YGH · UniProt A0A1S6Q290

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