MolNFT v1 · #140616 · protein

Crystal structure of the capsid protein from zika virus

5YGH: “Crystal structure of the capsid protein from zika virus”. X-ray diffraction, 1 pocket (best druggability 0.39). MolNFT v1 #140616 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5YGH
Type: protein
Length: 146 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Capsid protein
UniProt: A0A1S6Q290
Pockets: 1 · best druggability 0.39

Structure

x-ray diffraction · 1 distinct chain · 67% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Capsid protein	protein	73	67% helix, 0% strand	A0A1S6Q290

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	59	0.39	0.80	20	empty

Interfaces

1 interface between chains.

A–B · 2413 Å² buried · 20 hydrogen bonds · protein-protein

Compared structures

5YGH · Crystal Structure of the Capsid Protein from Zika Virus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A1S6Q290
Elsewhere: RCSB PDB 5YGH · PDBe 5YGH · UniProt A0A1S6Q290

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