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PanDDA analysis group deposition -- Proteinase K crystal structure Apo40

Analyse PanDDA analysis group deposition -- Proteinase K crystal structure Apo40 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5RPE
Type: protein
Length: 279 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.02
Source: Parengyodontium album
Molecule: Proteinase K
EC: 3.4.21.64
UniProt: P06873
Pockets: 1 · best druggability 0.35

Structure

x-ray diffraction · resolution 1.02 · 1 distinct chain · 27% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Proteinase K (EC 3.4.21.64)	protein	279	27% helix, 24% strand	P06873

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	80	0.35	0.76	27	empty

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

5RPE · Pandda analysis group deposition -- proteinase K crystal structure APO40 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P06873
Elsewhere: RCSB PDB 5RPE · PDBe 5RPE · UniProt P06873

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