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The cryofrozen atomic resolution X-ray crystal structure of the reduced form (Fe2+) perdeuterated Pyrococcus furiosus Rubredoxin in D2O (100K, 0.75 Angstrom resolution)

Analyse The cryofrozen atomic resolution X-ray crystal structure of the reduced form… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5OME
Type: protein
Length: 54 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 0.747
Source: Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
Molecule: Rubredoxin
UniProt: P24297
Ligands: FE, NA, PO4

Structure

x-ray diffraction · resolution 0.747 · 1 distinct chain · 17% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Rubredoxin	protein	54	17% helix, 26% strand	P24297

Ligands and binding sites

FE · Fe (III) ion · metal · chains A
NA · Sodium ion · metal · chains A
PO4 · Phosphate ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5OME · The cryofrozen atomic resolution X-ray crystal structure of the reduced form (FE2+)… · the same entry in another collection · chain A against A, TM-score 1.00
P24297 · AlphaFold monomer V2.0 prediction for rubredoxin (P24297) · a predicted model of the same protein · chain A against A, TM-score 0.97

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P24297
Elsewhere: RCSB PDB 5OME · PDBe 5OME · UniProt P24297

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