MolNFT v1 · #129505 · protein
The cryofrozen atomic resolution X-ray crystal structure of the reduced form (FE2+) perdeuterated pyrococcus furiosus rubredoxin in D2O (100K, 0.75 ångström resolution)
5OME: “The cryofrozen atomic resolution X-ray crystal structure of the reduced form (FE2+) perdeuterated pyrococcus…”. X-ray diffraction, 3 ligands (FE, NA, PO4). MolNFT v1 #129505 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5OME
- Type
- protein
- Length
- 54 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P24297
- Ligands
- FE, NA, PO4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 54 | — | P24297 |
Ligands and binding sites
- FE · Fe (III) ion · metal · chains A
- NA · Sodium ion · metal · chains A
- PO4 · Phosphate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5OME · The cryofrozen atomic resolution X-ray crystal structure of the reduced form (Fe2+)… · the same entry in another collection · chain A against A, TM-score 1.00
- P24297 · AlphaFold monomer V2.0 prediction for rubredoxin (P24297) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P24297
- Elsewhere: RCSB PDB 5OME · PDBe 5OME · UniProt P24297
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