Research workbench

Structure of the antibacterial peptide ABC transporter McjD in an apo inward occluded conformation

Analyse Structure of the antibacterial peptide ABC transporter McjD in an apo inward… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5OFP
Type: protein
Length: 571 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 4.71
Source: Escherichia coli
Molecule: Microcin-J25 export ATP-binding/permease protein McjD
UniProt: Q9X2W0
Pockets: 7 · best druggability 0.71

Structure

x-ray diffraction · resolution 4.71 · 1 distinct chain · 61% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Microcin-J25 export ATP-binding/permease protein McjD	protein	571	61% helix, 10% strand	Q9X2W0

Pockets

7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	51	0.71	0.98	17	empty
2	425	0.65	0.78	29	empty
3	244	0.51	0.75	27	empty
4	91	0.43	0.79	17	empty
5	55	0.43	0.83	19	empty

Compared structures

5OFP · Structure of the antibacterial peptide ABC transporter mcjd in an apo inward occluded… · the same entry in another collection · chain A against A, TM-score 1.00
Q9X2W0 · AlphaFold monomer V2.0 prediction for microcin-J25 export ATP- BINDING/PERMEASE protein… · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9X2W0
Elsewhere: RCSB PDB 5OFP · PDBe 5OFP · UniProt Q9X2W0

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.