MolNFT v1 · #129286 · protein

Structure of the antibacterial peptide ABC transporter mcjd in an apo inward occluded conformation

5OFP · Microcin-J25 export ATP-BINDING/PERMEASE protein mcjd: “Structure of the antibacterial peptide ABC transporter mcjd in an apo inward occluded conformation”. X-ray diffraction, 7 pockets (best druggability 0.71). MolNFT v1 #129286 on…

PDB: 5OFP
Type: protein
Length: 571 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Microcin-J25 export ATP-BINDING/PERMEASE protein mcjd
UniProt: Q9X2W0
Pockets: 7 · best druggability 0.71

Structure

x-ray diffraction · 1 distinct chain · 61% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Microcin-J25 export ATP-BINDING/PERMEASE protein mcjd	protein	571	61% helix, 10% strand	Q9X2W0

Pockets

7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	51	0.71	0.98	17	empty
2	425	0.65	0.78	29	empty
3	244	0.51	0.75	27	empty
4	91	0.43	0.79	17	empty
5	55	0.43	0.83	19	empty

Compared structures

5OFP · Structure of the antibacterial peptide ABC transporter McjD in an apo inward occluded… · the same entry in another collection · chain A against A, TM-score 1.00
Q9X2W0 · AlphaFold monomer V2.0 prediction for microcin-J25 export ATP- BINDING/PERMEASE protein… · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9X2W0
Elsewhere: RCSB PDB 5OFP · PDBe 5OFP · UniProt Q9X2W0

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