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Photorhabdus asymbiotica lectin (PHL) in complex with D-galactose

Analyse Photorhabdus asymbiotica lectin (PHL) in complex with D-galactose in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5MXH
Type: protein
Length: 346 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.95
Source: Photorhabdus asymbiotica subsp. asymbiotica (strain ATCC 43949 / 3105-77)
Molecule: Photorhabdus asymbiotica lectin PHL
UniProt: C7BLE4
Ligands: GAL, MG, CL
Pockets: 3 · best druggability 0.79

Structure

x-ray diffraction · resolution 1.95 · 1 distinct chain · 0% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Photorhabdus asymbiotica lectin PHL	protein	346	0% helix, 45% strand	C7BLE4

Ligands and binding sites

GAL · beta-D-galactopyranose · sugar · 3 copies · chains A
MG · Magnesium ion · metal · chains A
CL · Chloride ion · ion · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	675	0.79	0.83	44	CL
2	60	0.36	0.79	17	empty
3	54	0.36	0.79	18	empty

Compared structures

5MXH · Photorhabdus asymbiotica lectin (phl) in complex with D-galactose · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C7BLE4
Elsewhere: RCSB PDB 5MXH · PDBe 5MXH · UniProt C7BLE4

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