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High-speed fixed-target serial virus crystallography

Analyse High-speed fixed-target serial virus crystallography in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5MQW
Type: protein
Length: 247 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.4
Source: Operophtera brumata cypovirus 18
Molecule: Polyhedrin
UniProt: Q30C70
Ligands: GTP, ATP, MG, CL
Pockets: 4 · best druggability 0.50

Structure

x-ray diffraction · resolution 2.4 · 1 distinct chain · 23% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Polyhedrin	protein	247	23% helix, 29% strand	Q30C70

Ligands and binding sites

GTP · Guanosine-5'-triphosphate · ligand · chains A
ATP · Adenosine-5'-triphosphate · ligand · chains A
MG · Magnesium ion · metal · chains A
CL · Chloride ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	153	0.50	0.79	23	empty
2	88	0.34	0.75	17	empty
3	75	0.33	0.75	19	empty
4	66	0.31	0.74	15	empty

Compared structures

5MQW · High-speed fixed-target serial virus crystallography · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q30C70
Elsewhere: RCSB PDB 5MQW · PDBe 5MQW · UniProt Q30C70

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